PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0400s0160.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 256aa    MW: 27651.1 Da    PI: 5.4394
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0400s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-1785135155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + ++GVr++  +g+Wv+e+r+p   +k+ r++lg+f  ae+Aa+a++ a+++l+g
  SapurV1A.0400s0160.1.p  85 PVFRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPIAEMAARAHDVAALALRG 135
                             579****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-1385135IPR001471AP2/ERF domain
SMARTSM003801.2E-2886149IPR001471AP2/ERF domain
PROSITE profilePS5103221.83886143IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2086145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-3186145IPR001471AP2/ERF domain
CDDcd000184.69E-3087145No hitNo description
PRINTSPR003671.2E-78798IPR001471AP2/ERF domain
PRINTSPR003671.2E-7109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDCFSHYSDP SPLGARIFWS VLNENNGIGQ EQCSYSPVLS DSSTASTVTT GVQPAPSLSD  60
EEVMLASRNP KKRAGRKKFR ETRHPVFRGV RRRNSGKWVC EVREPNKKSR IWLGTFPIAE  120
MAARAHDVAA LALRGRSACL NFADSAWRLP VPASSEAKDI QKAAAEAAEA FRPEGCVGGE  180
LMRRGDEGKK VAETAAEAEE GVFYMDDEAV FGMPGLLANM AEGMLLPPPH CGGGGDGWGN  240
TEDIDPDMSL WSFSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1300680.0KJ130068.1 Populus simonii genotype 05 C-repeat/dehydration-responsive element-binding factor 4 (CBF4) gene, complete cds.
GenBankKJ1300720.0KJ130072.1 Populus simonii genotype 09 C-repeat/dehydration-responsive element-binding factor 4 (CBF4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318846.11e-168hypothetical protein POPTR_0012s13870g
SwissprotQ9FJ932e-80DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLB9I4F31e-168B9I4F3_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13870.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.13e-63dehydration response element B1A